Item
Were one or more aliquots generated from the parent samples?
text
Code List
Were one or more aliquots generated from the parent samples?
BIO_ALIQ_PRNT_ID
Item
Parent/primary sample ID of the aliquot
string
BIO_ALIQ_ID
Item
Sample ID of the aliquot
string
Item
Biomaterial type (aliquot)
text
Code List
Biomaterial type (aliquot)
CL Item
EDTA plasma (LIQUID_EDTA_PLA)
CL Item
Serum (LIQUID_SER)
CL Item
Citrated blood (LIQUID_CIT_BLO)
CL Item
Citrated plasma (LIQUID_CIT_PLA)
CL Item
Buffy coat (LIQUID_BC)
CL Item
Paxgene RNA (LIQUID_RNA_PAX)
CL Item
Tempus RNA (LIQUID_RNA_TEM)
CL Item
PBMC (LIQUID_PBMC)
CL Item
Urine sediment (LIQUID_URI_SED)
CL Item
Urine (LIQUID_URI)
CL Item
Saliva (LIQUID_SAL)
CL Item
Stool (native) (LIQUID_STO_NAT)
CL Item
Stool (stabilized) (LIQUID_STO_STA)
CL Item
Other liquid sample (LIQUID_OTH)
CL Item
Tissue: fresh frozen (TISSUE_FF)
CL Item
Tissue: FFPE (formalin-fixed) (TISSUE_FFPE)
CL Item
Other tissue sample (TISSUE_OTH)
CL Item
Sample type unknown/no information available (X)
Item
Is there information on the aliquot quantity?
text
Code List
Is there information on the aliquot quantity?
BIO_ALIQ_AMOUNT
Item
Aliquot quantity
float
Item
Unit of the aliquot quantity
text
Code List
Unit of the aliquot quantity
CL Item
Cubic centimeter (CM3)
CL Item
Microliter (MICL)
CL Item
No information available (X)
Item
Is there information on the aliquot concentration?
text
Code List
Is there information on the aliquot concentration?
BIO_ALIQ_CONCENTRATION
Item
Aliquot concentration
float
Item
Unit of the aliquot concentration
text
Code List
Unit of the aliquot concentration
CL Item
Nanogram/microliter (NG_MICL)
CL Item
Microgram/microliter (MICG_MICL)
CL Item
Picogram/microliter (PG_MICL)
CL Item
Milligram/microliter (MG_ML)
CL Item
No information available (X)
Item
Primary container: Type of sample container for withdrawal
text
Code List
Primary container: Type of sample container for withdrawal
CL Item
Acid citrate dextrose (ACD)
CL Item
Serum tube without clot activator (CAT)
CL Item
Citrate phosphate dextrose (CPD)
CL Item
Cell Preparation Tube® (CPT)
CL Item
EDTA and gel (EDG)
CL Item
Lithium heparin (HEP)
CL Item
Lithium heparin and gel (LHG)
CL Item
Oragene collection container or equivalent (ORG)
CL Item
PAXgene® blood RNA+ (PAX)
CL Item
Potassium EDTA (PED)
CL Item
Polyethylene tube sterile (PET)
CL Item
S8820 protease inhibitor tablets or equivalent (PI1)
CL Item
Protease inhibitors (PIX)
CL Item
Polypropylene tube sterile (PPS)
CL Item
PAXgene® blood DNA (PXD)
CL Item
PAXgene® bone marrow RNA (PXR)
CL Item
Sodium citrate (SCI)
CL Item
Sodium EDTA (SED)
CL Item
Sodium heparin (SHP)
CL Item
Sodium fluoride/potassium oxalate (SPO)
CL Item
Serum separator tube with clot activator (SST)
CL Item
Tempus® tube (TEM)
CL Item
Trace elements tube (TRC)
CL Item
Another sample container (OTHER)
CL Item
No information available (X)
BIO_ALIQ_PRIMARY_CONTAINER_OTHER
Item
Primary container: What other sample container type was used for collection?
string
Item
Tissue sample: Warm ischemia time
text
Code List
Tissue sample: Warm ischemia time
CL Item
Other time (OTHER)
CL Item
No information available (e.g. biopsy) (X)
Item
Tissue sample: Cold ischemia time
text
Code List
Tissue sample: Cold ischemia time
CL Item
Other time (OTHER)
CL Item
No information available (e.g. autopsy) (X)
BIO_ALIQ_TI_SAMPLE_LOCATION
Item
Tissue sample: Localization of the sampling site (specify with code system if possible)
string
BIO_ALIQ_TI_SAMPLE_LOCATION_CDSTM
Item
Tissue sample: Code system of localization
string
Item
Tissue sample: Type of tissue collection
text
Code List
Tissue sample: Type of tissue collection
CL Item
Biopsy specimen (BIOP)
CL Item
Resectate (RESEC)
CL Item
Another type (OTHER)
CL Item
No information available (X)
BIO_ALIQ_TI_SAMPLE_MORPHOLOGY
Item
Tissue sample: Morphology of the tissue sample
string
BIO_ALIQ_TI_SAMPLE_MORPHOLOGY_CDSTM
Item
Tissue sample: Code system of the morphology
string
Item
Tissue sample: Tissue type
text
Code List
Tissue sample: Tissue type
CL Item
Tumor tissue (TG)
CL Item
Normal tissue (NG)
CL Item
Inflammatory tissue (EG)
CL Item
No information available (X)
Item
Tissue sample: Is it known on which day and at what time the sample fixation took place?
text
Code List
Tissue sample: Is it known on which day and at what time the sample fixation took place?
CL Item
Yes, day and time are known. (YDH)
CL Item
Yes, only the day is known. (YD)
CL Item
No, neither day nor time is known. (N)
BIO_ALIQ_TI_FIXATION_DATE
Item
Tissue sample: When (on which day) did the sample fixation take place?
date
BIO_ALIQ_TI_FIXATION_TIME
Item
Tissue sample: When (at what time) did the sample fixation take place?
time
Item
Tissue sample: Is a virtual microscopy available?
text
Code List
Tissue sample: Is a virtual microscopy available?
CL Item
No information available (X)
Item
Processing: Is it known on which day and at what time further processing took place?
text
Code List
Processing: Is it known on which day and at what time further processing took place?
CL Item
Yes, day and time are known. (YDH)
CL Item
Yes, only the day is known. (YD)
CL Item
No, neither day nor time is known. (N)
BIO_ALIQ_PROCESSING_DATE
Item
Processing: When (on which day) did the further processing take place?
date
BIO_ALIQ_PROCESSING_TIME
Item
Processing: When (at what time) did the processing take place?
time
Item
Processing: Type of (1st) centrifugation
text
Code List
Processing: Type of (1st) centrifugation
CL Item
Room temperature (18-28°C), 10 to 15min/<3,000g no braking (A)
CL Item
Room temperature (18-28°C), 10 to 15min/<3,000g with braking (B)
CL Item
Room temperature (18-28°C), 10 to 15min/3,000g to 6,000g with braking (C)
CL Item
Room temperature (18-28°C), 10 to 15min/6,000g to 10,000g with braking (D)
CL Item
Room temperature (18-28°C), 10 to 15min/>10,000g with braking (E)
CL Item
Room temperature (18-28°C), 30min/<1,000g no braking (F)
CL Item
2 to 10°C, 10 to 15min/<3,000g no braking (G)
CL Item
2 to 10°C, 10 to 15min/<3,000g with braking (H)
CL Item
2 to 10°C, 10 to 15min/3,000g to 6,000g with braking (I)
CL Item
2 to 10°C, 10 to 15min/6,000g to 10,000g with braking (J)
CL Item
2 to 10°C, 10 to 15min/>10,000g with braking (K)
CL Item
No centrifugation (N)
CL Item
Other type of centrifugation (OTHER)
CL Item
No information available (X)
Item
Processing: Type of (2nd) centrifugation
text
Code List
Processing: Type of (2nd) centrifugation
CL Item
Room temperature, 10 to 15min/<3,000g no braking (A)
CL Item
Room temperature, 10 to 15min/<3,000g with braking (B)
CL Item
Room temperature, 10 to 15min/3,000g to 6,000g with braking (C)
CL Item
Room temperature, 10 to 15min/6,000g to 10,000g with braking (D)
CL Item
Room temperature, 10 to 15min/>10,000g with braking (E)
CL Item
Room temperature, 30min/<1,000g no braking (F)
CL Item
2 to 10°C, 10 to 15min/<3,000g no braking (G)
CL Item
2 to 10°C, 10 to 15min/<3,000g with braking (H)
CL Item
2 to 10°C, 10 to 15min/3,000g to 6,000g with braking (I)
CL Item
2 to 10°C, 10 to 15min/6,000g to 10,000g with braking (J)
CL Item
2 to 10°C, 10 to 15min/>10,000g with braking (K)
CL Item
No second centrifugation (N)
CL Item
Other type of centrifugation (OTHER)
CL Item
No information available (X)
Item
Storage: Are the date and time of freezing of the sample known?
text
Code List
Storage: Are the date and time of freezing of the sample known?
CL Item
Yes, day and time are known. (YDH)
CL Item
Yes, only the day is known. (YD)
CL Item
No, neither day nor time is known. (N)
BIO_ALIQ_STORAGE_DATE
Item
Storage: When (on which day) did the freezing take place?
date
BIO_ALIQ_STORAGE_TIME
Item
Storage: When (at what time) did the freezing take place?
time
Item
Storage: Where is the sample stored?
text
Code List
Storage: Where is the sample stored?
CL Item
African Partner Site (AFRP)
CL Item
Brunswick – DSMZ (BSDSMZ)
CL Item
Duesseldorf (DUE)
CL Item
Hamburg University (HH)
CL Item
Hamburg (BNI) (HHBNI)
CL Item
Hamburg (UKE) (HHUKE)
CL Item
Munich (LMU) (MLMU)
CL Item
Munich (TUM) (MTUM)
CL Item
Another storage location (OTHER)
CL Item
No information available (X)
Item
Storage: Is there information on how often the sample was thawed?
text
Code List
Storage: Is there information on how often the sample was thawed?
BIO_ALIQ_STORAGE_FREEZE_THAW_CYCLES
Item
Storage: Thaw counter
integer
Item
Storage: Sample container for long-term storage
text
Code List
Storage: Sample container for long-term storage
CL Item
Polypropylene tube 0.5 to 2mL/(-85) to (-60)°C (A)
CL Item
Polypropylene tube 0.5 to 2mL/(-35) to (-18)°C (B)
CL Item
Polypropylene tube 0.5 to 2mL/<-135°C (V)
CL Item
Cryotube 1 to 2mL/liquid nitrogen (C)
CL Item
Cryotube 1 to 2mL/(-85) to (-60)°C (D)
CL Item
Cryotube 1 to 2mL/Programmable freezing to <-135°C (E)
CL Item
Plastic cryo straw/liquid nitrogen (F)
CL Item
Straw/(-85) to (-60)°C (G)
CL Item
Straw/(-35) to (-18)°C (H)
CL Item
Straw/Programmable freezing to <-135°C (I)
CL Item
Polypropylene tube ≥ 5mL/(-85) to (-60)°C (J)
CL Item
Polypropylene tube ≥ 5mL/(-35) to (-18)°C (K)
CL Item
Microplate/(-85) to (-60)°C (L)
CL Item
Microplate/(-35) to (-18)°C (M)
CL Item
Cryotube 1 to 2mL/liquid nitrogen after temporary (-85) to (-60)°C (N)
CL Item
Plastic cryo straw/liquid nitrogen after temporary (-85) to (-60)°C (O)
CL Item
Paraffin block/room temperature (18-28°C) or 2 to 10°C (P)
CL Item
Bag/liquid nitrogen (Q)
CL Item
Dry technology medium/room temperature (18-28°C) (R)
CL Item
Polypropylene tube 40 to 500μL/(-85) to (-60)°C (S)
CL Item
Polypropylene tube 40 to 500μL/(-35) to (-18)°C (T)
CL Item
Polypropylene tube 40 to 500μL/<-135°C (W)
CL Item
Original primary container/(-35) to (-18)°C or (-85) to (-60)°C (Y)
CL Item
Another sample container (OTHER)
CL Item
Unknown/No information available (X)
Item
Sample (re-)use: Information on the availability of the sample
text
Code List
Sample (re-)use: Information on the availability of the sample
CL Item
Available (AVAIL)
CL Item
Not-available (NAVAIL)
CL Item
Unsatisfactory (UNSAT)
CL Item
No information available (X)